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Projects

Tools I have built and shipped, from genomic language models to bioinformatics libraries.

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing ↗ ↖

23 January 2025·53 words·1 min

Bioinformatics Machine Learning Deep Learning Language Model Whole-Genome Amplification Structural Variants

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing ↗ ↖

31 October 2024·54 words·1 min

Bioinformatics Machine Learning Deep Learning Nanopore Language Model Adapter Trimming

Aurora: A Web Application for Visualizing Non-Linear Graphs

Aurora: A Web Application for Visualizing Non-Linear Graphs ↗ ↖

26 August 2023

Tools Visualization Web App

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT ↗ ↖

25 June 2023

Bioinformatics Python

BINARY: A Bioinformatics Algorithm Library in Modern C++

BINARY: A Bioinformatics Algorithm Library in Modern C++

26 September 2022·107 words·1 min· loading · loading

Bioinformatics Algorithms C++ Data Structures

BOSS: A Bioinformatics Toolbox in Modern C++

BOSS: A Bioinformatics Toolbox in Modern C++

25 September 2022·89 words·1 min· loading · loading

Bioinformatics Software Development C++