DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing
·1772 words·9 mins·
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Posts
Notes on bioinformatics, systems programming, and the tools that make research work.
2026
2023
CUDA for Deep Learning Inference in Rust and C++
·1135 words·6 mins·
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Development Tips
·57 words·1 min·
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Efficient Genomic Interval Search With a SIMD-Enhanced COITree
·901 words·5 mins·
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How to Use the Noodles Library in Rust
·1777 words·9 mins·
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2022
macOS Setup for Development and Research
··1559 words·8 mins·
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Code Snippets I Keep Reaching For
··1151 words·6 mins·
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Building a C++ Development Environment With htslib
·1023 words·5 mins·
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2021
Pybox: A Small Toolbox for Everyday Research Tasks
·451 words·3 mins·
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PCA in Python: From Scratch and with scikit-learn
·971 words·5 mins·
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2019
Face Recognition in Video
·964 words·5 mins·
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Building Phylogenetic Trees with Neighbor Joining in Python
·3697 words·18 mins·
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