Machine Learning on Bytes of Life

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing

Thu, 07 May 2026 00:00:00 +0000

The chimera mystery
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Direct RNA sequencing (dRNA-seq) on Oxford Nanopore looks, on paper, like a transcriptomics dream. You sequence native RNA molecules end to end, you keep the modifications, and you skip every reverse-transcription and PCR step that has been quietly polluting short-read data for years. For a while, that was the story we were telling ourselves.

A language model enables accurate structural variant detection in whole-genome amplified long-read sequencing

Thu, 23 Jan 2025 00:00:00 +0000

Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing

Thu, 31 Oct 2024 00:00:00 +0000

CUDA for Deep Learning Inference in Rust and C++

Tue, 29 Aug 2023 00:00:00 +0000

1. Deep Learning Inference
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Currently, both Rust and C++ are emerging as noteworthy contenders in the realm of deep learning, primarily due to their efficiency despite Python’s prevailing dominance in model training. While Python continues to commandeer the training phase, it lags in performance during inference. Large Language Models (LLMs), such as ChatGPT, have burgeoned since their inception, instigating a competitive frenzy among corporations and research organizations alike. This has led to an explosion of various LLMs, although not all exhibit equal utility or value.

PCA by Python

Sun, 04 Apr 2021 00:00:00 +0000

1. Introduction
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This article records two methods of PCA analysis using Python, and visualizes 2-dimensional results

Face Recognition in Video

Thu, 20 Jun 2019 00:00:00 +0000

1. 准备工作
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使用Python实现需求，环境需求比较严苛，所需要的主要依赖：

Requirements

dlib 由 C++编写，提供了和机器学习、数值计算、图模型算法、图像处理等领域相关的一系列功能
face-recognition 已经经过训练成熟的识别人脸的工具
imutils 用来操作系统文件和文件夹
Opencv是用来操作视频流，并将视频流转换格式

1.1 环境搭建
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通过 pip 进行安装，在使用 pip 进行安装时，应该注意切换到国内源进行下载，提高下载速度，下面分享一下当前国内的 pip 源：