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Bioinformatics

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing

7 May 2026·1772 words·9 mins· loading · loading

Bioinformatics Machine Learning Writing Deep Learning Nanopore Language Model Adapter Trimming Rust

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing ↗ ↖

23 January 2025·53 words·1 min

Bioinformatics Machine Learning Deep Learning Language Model Whole-Genome Amplification Structural Variants

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing ↗ ↖

31 October 2024·54 words·1 min

Bioinformatics Machine Learning Deep Learning Nanopore Language Model Adapter Trimming

Interactive Visualization of Non-Linear Graphs with Aurora

Interactive Visualization of Non-Linear Graphs with Aurora ↗ ↖

4 April 2024

Bioinformatics Tools Visualization Web App Data Structures

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT ↗ ↖

25 June 2023

Bioinformatics Python

Efficient Genomic Interval Search With a SIMD-Enhanced COITree

Efficient Genomic Interval Search With a SIMD-Enhanced COITree

12 March 2023·901 words·5 mins· loading · loading

Bioinformatics Algorithms Rust Performance

How to Use the Noodles Library in Rust

How to Use the Noodles Library in Rust

4 March 2023·1777 words·9 mins· loading · loading

Bioinformatics Software Development Rust

BINARY: A Bioinformatics Algorithm Library in Modern C++

BINARY: A Bioinformatics Algorithm Library in Modern C++

26 September 2022·107 words·1 min· loading · loading

Bioinformatics Algorithms C++ Data Structures

BOSS: A Bioinformatics Toolbox in Modern C++

BOSS: A Bioinformatics Toolbox in Modern C++

25 September 2022·89 words·1 min· loading · loading

Bioinformatics Software Development C++

Building a C++ Development Environment With htslib

Building a C++ Development Environment With htslib

15 June 2022·1023 words·5 mins· loading · loading

Bioinformatics Software Development C++

Building Phylogenetic Trees with Neighbor Joining in Python

Building Phylogenetic Trees with Neighbor Joining in Python

3 April 2019·3697 words·18 mins· loading · loading

Bioinformatics Algorithms Python