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Yangyang Li

Yangyang Li

PhD Candidate @ Northwestern University

Recent

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing

7 May 2026·1772 words·9 mins· loading · loading

Bioinformatics Machine Learning Writing Deep Learning Nanopore Language Model Adapter Trimming Rust

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing

ChimeraLM: Structural Variant Detection in WGA Long-Read Sequencing ↗ ↖

23 January 2025·53 words·1 min

Bioinformatics Machine Learning Deep Learning Language Model Whole-Genome Amplification Structural Variants

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing

DeepChopper: Removing Chimeras in Nanopore Direct RNA Sequencing ↗ ↖

31 October 2024·54 words·1 min

Bioinformatics Machine Learning Deep Learning Nanopore Language Model Adapter Trimming

$Automate Your LaTeX Build$

Automate Your LaTeX Build

1 September 2023·881 words·5 mins· loading · loading

Writing LaTeX CI

CUDA for Deep Learning Inference in Rust and C++

CUDA for Deep Learning Inference in Rust and C++

29 August 2023·1135 words·6 mins· loading · loading

Machine Learning Software Development Rust C++ CUDA

Aurora: A Web Application for Visualizing Non-Linear Graphs

Aurora: A Web Application for Visualizing Non-Linear Graphs ↗ ↖

26 August 2023

Tools Visualization Web App

Development Tips

Development Tips

5 July 2023·57 words·1 min· loading · loading

Tools MacOS Development

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT ↗ ↖

25 June 2023

Bioinformatics Python

$My TikZ Learning Journey$

My TikZ Learning Journey

2 June 2023·305 words·2 mins· loading · loading

Writing LaTeX TikZ

Efficient Genomic Interval Search With a SIMD-Enhanced COITree

Efficient Genomic Interval Search With a SIMD-Enhanced COITree

12 March 2023·901 words·5 mins· loading · loading

Bioinformatics Algorithms Rust Performance