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Bytes of Life
Yangyang Li

Yangyang Li

PhD Candidate @ Northwestern University

Recent

DeepChopper: A Genomic Language Model that Cleans Up Nanopore Direct RNA Sequencing
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Bioinformatics Machine Learning Writing Deep Learning Nanopore Language Model Adapter Trimming Rust
A language model enables accurate structural variant detection in whole-genome amplified long-read sequencing ↗ ↖
Bioinformatics Machine Learning Deep Learning Language Model Whole-Genome Amplification Structural Variants
Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequencing ↗ ↖
Bioinformatics Machine Learning Deep Learning Nanopore Language Model Adapter Trimming
Autonamte Latex Build Processing
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Writing LaTeX CI
CUDA for Deep Learning Inference in Rust and C++
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Machine Learning Software Development Rust C++ CUDA
Aurora: A Web Application for Visualizing Non-linear Graph ↗ ↖
Tools Visualization Web App
Development Tips
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Tools
PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT ↗ ↖
Bioinformatics Python
TikZ-Learning Journey
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Writing LaTeX TikZ
Efficient Genomic Interval Search Using SIMD-Enhanced COITree
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Bioinformatics Algorithms Rust Performance